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Molecular Modelling freeware
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Molecular Modelling

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Added: January 25, 2010 | Visits: 537

FoldIt light 'FoldIt light' is a molecular modelling program to visualize and manipulate interactively protein structure files from the Brookhaven Protein Data Bank (PDB). It's an integrated environment allowing 3D manipulations as well as statistical analysis. Platforms: Mac

License: Freeware Size: 5 MB Download (75): FoldIt light Download

Added: August 14, 2013 | Visits: 281

Hidden Markov Models for Molecular Motors Hidden Markov models are used to describe the "stepping" behavior of molecular motors, as measured by single-molecule fluorescence techniques. Our HMM implementation is more versatile than the one described by Milescu, et al. Biophys. J. 91:3135-3150 and can be used as a "blind" step detector or... Platforms: Matlab

License: Freeware Size: 829.44 KB Download (19): Hidden Markov Models for Molecular Motors Download

Added: August 12, 2013 | Visits: 293

ORMA (Oligonucleotide Retrieving for Molecular Applications) ORMA (Oligonucleotide Retrieving for Molecular Applications) is a series of integrated scripts in Matlab, which performs an accurate search of all the positions able to specifically discriminate one species among homologous ones. ORMA also performs an accurate selection of high-quality... Platforms: Matlab

License: Freeware Size: 286.72 KB Download (18): ORMA (Oligonucleotide Retrieving for Molecular Applications) Download

Added: November 13, 2013 | Visits: 292

Molecular Dynamics Model The EJS Molecular Dynamics model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters. The motion of the molecules is governed by Newton's laws, approximated using the Verlet algorithm with the indicated time step. For sufficiently small time steps dt,... Platforms: Mac

License: Freeware Size: 1.3 MB Download (17): Molecular Dynamics Model Download

Added: July 24, 2013 | Visits: 240

Molecular Dynamics Demonstration Model The EJS Molecular Dynamics Demonstration model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters. The motion of the molecules is governed by Newton's laws, approximated using the Verlet algorithm with the indicated Time step. For sufficiently small... Platforms: Mac

License: Freeware Size: 1.3 MB Download (16): Molecular Dynamics Demonstration Model Download

Added: November 12, 2013 | Visits: 299

Molecular Dynamics Adiabatic Piston Model The Molecular Dynamics Adiabatic Piston model shows two gas samples within a horizontal cylinder that is divided by an insulated piston that moves without friction. It is a supplemental simulation for an article by Eric Gislason "A close examination of the motion of an adiabatic piston" in the... Platforms: Mac

License: Freeware Size: 1.12 MB Download (17): Molecular Dynamics Adiabatic Piston Model Download

Added: June 22, 2013 | Visits: 277

Nanodesigner Nanodesigner is a software platform for research on molecular nanotechnology. It has a plug-in architecture and will include tools for molecular visualization & modelling, design of complex new molecules, molecular dynamics,... Platforms: *nix

License: Freeware Size: 2.16 MB Download (21): Nanodesigner Download

Added: May 10, 2013 | Visits: 1.814

Art of Illusion Art of Illusion is a free, open source 3D modelling and rendering studio. Many of its capabilities rival those found in commercial programs. Highlights include subdivision surface based modelling tools, skeleton based animation, and a graphical language for designing procedural textures and... Platforms: Windows, Mac, *nix, Java, BSD Solaris

License: Freeware Download (170): Art of Illusion Download

Added: August 13, 2010 | Visits: 1.011

Avogadro Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. This project offers a flexible rendering engine and a powerful plugin architecture. The main concept behind Avogadro... Platforms: *nix

License: Freeware Size: 256 KB Download (138): Avogadro Download

Added: June 20, 2010 | Visits: 620

Games::Othello Games::Othello is a Perl extension for modelling a game of Othello. SYNOPSIS use Games::Othello; my $game = Games::Othello->new(); while( !game->over ) { printf "It is presently %ss move", ($game->whos_move eq b) ? black, white; my @possible_moves = values $game->possible_moves(); if... Platforms: *nix

License: Freeware Size: 5.12 KB Download (73): Games::Othello Download

Added: October 08, 2010 | Visits: 575

Alzabo Alzabo is a Perl module with data modelling tool and RDBMS-OO mapper. SYNOPSIS Cannot be summarized here. What is Alzabo? Alzabo is a suite of modules with two core functions. Its first use is as a data modelling tool. Through either a schema creation GUI, a perl program, or reverse... Platforms: *nix

License: Freeware Size: 204.8 KB Download (71): Alzabo Download

Added: October 16, 2010 | Visits: 1.253

DbModeller DbModeller project is a database schema modelling application for building physical database designs. This can connect to an existing database a pull down the schema or create from scratch. It currently allows modelling of tables and referential integrity constraints and generates SQL for the... Platforms: *nix

License: Freeware Size: 870.4 KB Download (131): DbModeller Download

Added: May 12, 2010 | Visits: 683

ASCEND ASCEND is a flexible modelling environment for solving hard engineering and science problems. It offers: - an object-oriented model description language for describing your system, - an interactive user interface that allows you to solve your model and explore the effect of changing the model... Platforms: *nix

License: Freeware Size: 2.9 MB Download (87): ASCEND Download

Added: October 23, 2010 | Visits: 531

openModeller openModeller library is a spatial distribution modelling library, providing a uniform method for modelling distribution patterns using a variety of modelling algorithms. openModeller can be used via programatic interfaces, including SOAP and SWIG-python, as well as via a user friendly desktop... Platforms: *nix

License: Freeware Download (74): openModeller Download

Added: June 26, 2013 | Visits: 637

Ayam Ayam is a free 3D modelling environment for the RenderMan interface, distributed under the BSD licence. This means that neither the author nor any contributors make money out of this software. We need your (yes your!) feedback to keep this project alive. If you use Ayam, please submit your... Platforms: *nix

License: Freeware Size: 8.61 MB Download (84): Ayam Download

Added: July 22, 2010 | Visits: 883

Bio::MCPrimers Bio::MCPrimers is a Perl module to create molecular cloning PCR primer pairs for a given gene so that the gene can be directionally inserted into a vector. Solver is generic, restriction enzymes and their order in the vector are specified in the caller. XPORT SUBROUTINES sub find_mc_primers... Platforms: *nix

License: Freeware Size: 174.08 KB Download (81): Bio::MCPrimers Download

Added: January 17, 2010 | Visits: 901

LAMMPS LAMMPS project is a Molecular Dynamics Simulator. LAMMPS has potentials for soft materials (biomolecules, polymers) and solid-state materials (metals, semiconductors) and coarse-grain systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the mesoscale... Platforms: *nix

License: Freeware Download (109): LAMMPS Download

Released: October 16, 2012  |  Added: October 16, 2012 | Visits: 288

Innesoft DeepMesh Innesoft DeepMesh is a professional and reliable application designed for 3D modelling. It features support for over 20 model formats, skinned animation, a built-in uv mapper, lightmapper and hundreds of tools for building and editing character models, maps and environments. Ideal for game... Platforms: Windows

License: Freeware Download (64): Innesoft DeepMesh Download

Released: June 21, 2012  |  Added: June 21, 2012 | Visits: 312

Open3DALIGN x64 Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or piped through standard input. If PyMOL is... Platforms: Windows

License: Freeware Size: 5.2 MB Download (47): Open3DALIGN x64 Download

Released: October 24, 2012  |  Added: October 24, 2012 | Visits: 271

BALLView BALLView is our standalone molecular modeling and visualization application. Furthermore it is also a framework for developing molecular visualization functionality. It is available free of charge under the GPL for Linux, Windows and MacOS. It provides fast OpenGL-based visualization of... Platforms: Windows

License: Freeware Size: 38 MB Download (56): BALLView Download

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